Siu's Lab of Computational Biology
Institute of Science and Environment
University of Saint Joseph (ISE@USJ)
Macau
Server
Our app server https://app.cbbio.online hosts the methods that can be accessed directly online
| AxPEP Antimicrobial peptide classification methods AmPEP, Deep-AmPEP30, RF-AmPEP30 |
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| AcPEP Anticancer peptide classification and cancer-type biological activity prediction xDeep-AcPEP |
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| LigTMap Chemical compound target identification and activity prediction |
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| BESTox Chemical compound toxicity prediction (acute oral toxicity LD50 value) |
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Downloadable Software
Protein-Ligand Docking
Particle swarm optimization for ligand conformational search combined with Singer chaotic function
Grey wolf optimization for ligand and protein sidechain flexibility
Self-Assembled Monolayers
A refined empirical force field to model protein-SAM interactions based on GAFF and AMBER14
Fast prediction of protein preferred orientation on a surface
Molecular Visualization
PyMOL Mobile controller for molecular visualization
